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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 13

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 33 22

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 14

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ComputationalReviewTemplate ComputationalReviewTemplate Public template

    A repository to start computational reviews with AI

    JavaScript 13 3

Repositories

Showing 10 of 731 repositories
  • nmcp-client Public
    AllenNeuralDynamics/nmcp-client's past year of commit activity
    TypeScript 0 0 10 0 Updated Nov 10, 2026
  • Aind.Physiology.Fip Public

    A repository with a Fiber Photometry acquisition pipeline

    AllenNeuralDynamics/Aind.Physiology.Fip's past year of commit activity
    C# 0 MIT 0 3 2 Updated Nov 10, 2026
  • nmcp-qc Public

    NMCP quality control services.

    AllenNeuralDynamics/nmcp-qc's past year of commit activity
    Python 0 0 0 0 Updated Nov 10, 2026
  • AllenNeuralDynamics/aind-pophys-metadata's past year of commit activity
    Python 0 MIT 0 0 5 Updated Nov 10, 2026
  • nmcp-precomputed Public

    NMCP precomputed worker/service.

    AllenNeuralDynamics/nmcp-precomputed's past year of commit activity
    Python 0 0 2 0 Updated Nov 10, 2026
  • nmcp-api Public
    AllenNeuralDynamics/nmcp-api's past year of commit activity
    TypeScript 1 0 0 0 Updated Nov 10, 2026
  • aind-zarr-utils Public

    Utilities for working with ZARR files and AIND metadata

    AllenNeuralDynamics/aind-zarr-utils's past year of commit activity
    Python 2 MIT 0 1 2 Updated Nov 10, 2026
  • SLAP2-Voltage-Extraction Public Forked from AMShelton/SLAP2-Voltage-Extraction

    Repository for extracting voltage data from SLAP2 acquisitions

    AllenNeuralDynamics/SLAP2-Voltage-Extraction's past year of commit activity
    MATLAB 0 1 0 0 Updated Nov 10, 2026
  • micetosis Public
    AllenNeuralDynamics/micetosis's past year of commit activity
    TypeScript 0 0 2 1 Updated Nov 10, 2026
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper's past year of commit activity
    Python 0 MIT 2 29 4 Updated Nov 10, 2026