[t0mdavid-m]

Requested by Tom · project thread

Gives OpenDDA the page structure the other OpenMS web apps use: Describe experiment → Run analysis → Explore results → Export results. On every results page, what is shown comes first, then how it is shown.

Needs OpenMS/streamlit-template#573. This branch carries the same template change as its first commit, so it runs on its own, and the next template sync makes the two identical.

What changes for users

Explore results

• One row at the top holds the run picker and the buttons that act on the run it shows:
  • Edit comparison
  • History
  • Add analysis, a menu with Process more files
  • Export (or Download online)
• The view bar follows below that row, then the components.
• The page title is gone, and so are the ⚖️ ➕ 📤 icons in the view bar; the named buttons in the top row replace them.

History (new): how the result came about, opened from Explore results and shown on each run's card on Export results.

• A timeline: when the run started, on which files, and which runs added files to it.
• The tool settings that differ from the tools' defaults, with the default and the value used.
• The processing report, as Markdown or PDF.
• The provenance from the QPX export.
• Start again with these settings, which opens Describe experiment with the experiment's files and settings.

Menu and run flow

• The menu opens with an OpenDDA section holding Quickstart 👋, followed by 🧬 DDA analysis. Explore results uses 👀.
• The name field beside Run analysis is labelled Experiment name, and Run analysis shows that name while the run is going.
• Run analysis points to Export results once a run has finished.
• On Export results, each run's card has a History section, which replaces the separate Processing report and Provenance sections.

Screenshots

Explore results, before:

Explore results, after:

History:

Add analysis:

Export results, before and after:

Run analysis, before and after:

Video, opening History and Add analysis: explore-results-top-row.mp4

The screenshots were added in one commit and removed in the next, so they are not part of the diff.

Notes for review

• The History dialog stays open across the page rerun that its provenance table triggers when it first draws. It uses the same open flag as Edit comparison.
• The diff does not overlap with Explore results: charge states and missed cleavages per file #143, Explore results: sample correlation heatmap #154 or Run analysis: notify when a run ends #155. It may conflict with the template sync Sync with template (4aa6051) #141 in src/layout_manager/ui.py. Whichever PR merges second takes the template's version of that file.

Tests

• New: tests/test_viewer_history.py, which covers the timeline and the settings that differ from the defaults.
• Full suite: 973 passed, 3 skipped.
• pylint (errors only): clean on the changed files.

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