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@flyconnectome

Drosophila Connectomics group

Drosophila Whole Brain Connectomics
README.md

Fly Connectome

Tools to analyse connectomes, built on the natverse (R) and navis (Python). Full overview: flyconnectome.github.io/tools.

Knowledge

Analysis

  • cocoa: comparative connectomics in Python
  • bigclust2: explore clusterings of connectome data
  • acdc_py: AC/DC neuron matching in Python
  • influencer: influence of one group of neurons on another, through all paths
  • comorpher: transfers cell types between connectomes, using morphology and connectivity

Visualisation

  • nat.ggplot: publication-quality 2D neuroanatomy renderings with ggplot2

Dataset access

AI agents

Datasets

  • BANC: brain and nerve cord connectome, on Harvard Dataverse

Pinned Loading

  1. tools tools Public

    Overview of neuroscience tools developed in the Fly Connectomics group (University of Cambridge) and the Jefferis lab (MRC-LMB)

    Python 6

  2. catbot catbot Public

    Slack bot to interface with CATMAID server, NBLAST and Zotero

    Python 5 2

  3. dvid_tools dvid_tools Public

    Python tools to query a DVID server

    Python 1 1

  4. tracerutils tracerutils Public

    R tools for EM tracers

    R 1 1

  5. hemibrain_olf_data hemibrain_olf_data Public

    Summary data on identified FIB hemibrain neurons including olfactory PNs

    R 2

  6. 2020hemibrain_examples 2020hemibrain_examples Public

    Code examples for Schlegel, Bates et al. (2020)

    5 4

Repositories

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