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  1. PPanGGOLiN PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    Python 312 34

  2. PlaScope PlaScope Public

    🔬 ⭕ Plasmid exploration of bacterial genomes

    Roff 28 4

  3. netsyn netsyn Public

    NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.

    Python 11 2

  4. PANORAMA PANORAMA Public

    PANORAMA Project

    Python 11

  5. ASMC ASMC Public

    ASMC is a precision tool for deciphering the amino acid diversity that composes the active site of a given homologous protein family.

    Python 8 1

  6. microscope-user-doc microscope-user-doc Public

    MicroScope Platform User Documentation

    4 6

Repositories

Showing 10 of 31 repositories
  • PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    labgem/PPanGGOLiN's past year of commit activity
    Python 312 34 3 (1 issue needs help) 3 Updated Oct 30, 2026
  • metabiantes Public

    A tool to dump a part of the data of MetaCyc into a SQL file to be loaded in a relational database schema.

    labgem/metabiantes's past year of commit activity
    Common Lisp 0 0 0 0 Updated Oct 27, 2026
  • pan2met Public

    A python library / CLI to predict metabolic networks at the pangenome scale.

    labgem/pan2met's past year of commit activity
    Python 0 0 0 0 Updated Oct 27, 2026
  • MetaPanG Public

    Strain-level metagenomic profiling against pangenome graphs

    labgem/MetaPanG's past year of commit activity
    Python 1 0 1 0 Updated Oct 21, 2026
  • pan2met-wf Public

    Predict metabolic networks at pangenome scale

    labgem/pan2met-wf's past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Oct 15, 2026
  • PANORAMA Public

    PANORAMA Project

    labgem/PANORAMA's past year of commit activity
    Python 11 0 0 0 Updated Oct 14, 2026
  • PanGBank-tutorial Public

    Tutorials for PanGBank: explore, analyze, and download PPanGGOLiN pangenomes

    labgem/PanGBank-tutorial's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 12, 2026
  • PanGBank-api Public
    labgem/PanGBank-api's past year of commit activity
    Python 0 0 0 0 Updated Oct 5, 2026
  • PanGBank-cli Public

    Command-line tool for retrieving pangenomes using the PanGBank API.

    labgem/PanGBank-cli's past year of commit activity
    Python 2 1 0 1 Updated Oct 5, 2026
  • PlaScope Public

    🔬 ⭕ Plasmid exploration of bacterial genomes

    labgem/PlaScope's past year of commit activity
    Roff 28 GPL-3.0 4 4 1 Updated Sep 27, 2026
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