Skip to content
@pharmbio

pharmb.io

Pharmaceutical Bioinformatics research group at Uppsala University

Pinned Loading

  1. sciluigi sciluigi Public

    A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular

    Python 334 55

  2. bioimg-sciluigi-casestudy bioimg-sciluigi-casestudy Public

    An automated virtual machine setup, containing a use case for running workflows written in SciLuigi

    Python 5 1

  3. robotlab robotlab Public

    Cell painting and imaging with robots

    Python 12 1

  4. plaid plaid Public

    PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.

    Jupyter Notebook 21 5

  5. squid squid Public

    Forked from Cephla-Lab/Squid

    C 3

Repositories

Showing 10 of 124 repositories
  • pharmbio/cage2_automation's past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 12, 2026
  • robotlab Public

    Cell painting and imaging with robots

    pharmbio/robotlab's past year of commit activity
    Python 12 MIT 1 4 0 Updated Nov 11, 2026
  • librarian-serve Public

    A hosted instance of EMBL's Librarian at SciLifeLab Serve

    pharmbio/librarian-serve's past year of commit activity
    Python 1 0 0 0 Updated Nov 8, 2026
  • pharmbio-web Public

    The Static (Hugo) website for pharmb.io

    pharmbio/pharmbio-web's past year of commit activity
    JavaScript 3 7 0 4 Updated Oct 30, 2026
  • repuragent-web Public

    AI Agent for Drug Repurposing

    pharmbio/repuragent-web's past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Oct 26, 2026
  • repuragent Public

    Multi-agentic AI system for Drug Repurposing

    pharmbio/repuragent's past year of commit activity
    Python 25 4 1 1 Updated Oct 26, 2026
  • ths-models Public

    Hosted instances of 19 THS models in MISTRA toolbox

    pharmbio/ths-models's past year of commit activity
    Python 2 0 0 0 Updated Oct 19, 2026
  • pharmbio-cppipes Public

    Pharmbio standard CellProfiler pipelines

    pharmbio/pharmbio-cppipes's past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Oct 16, 2026
  • cppipeline2 Public

    version 2 of cppipeline

    pharmbio/cppipeline2's past year of commit activity
    Python 0 0 0 0 Updated Oct 15, 2026
  • chemsafe-agent Public

    AI Agent for Chemical Safety

    pharmbio/chemsafe-agent's past year of commit activity
    Python 3 0 0 0 Updated Oct 9, 2026