interactomics

Protein Graph Library

A python package to process protein cross-linking data.

Pure R implementation of SAINTexpress scoring (spectral counts and intensities) plus SAINT input table validation.

Local platform (browser + Docker) for CoIP-MS / AP-MS analysis and identification of protein-protein interaction partners in the mouse proteome (Mus musculus, taxid 10090). Orchestrates published proteomics tools in reproducible containers. Contains no experimental data.

msVolcano: client-side volcano plots for MaxQuant interactomics data (Proteomics 2016)

Python program that can identify the residues interacting between chains of a complex protein.

A comprehensive user guide for pyXLMS built with Nextra.

Python program which is able to analyse dssp files in order to estimate the interacting area and interacting residues between monomers of a complex protein

Pydantic version of pyXLMS [merged into main pyXLMS in v2.0.0]

Results, figures, and code for the manuscript of pyXLMS.

A comprehensive user guide for pyXLMS built with Nextra.

Reproducible R/Quarto workflow for the analysis of the JAG1-ICD RIME-DIA proteomics dataset.

Link to the web application for pyXLMS.

A template repository for python scripts and projects using pyXLMS.

First-trimester single-cell RNA-seq analysis, followed by the hypergraph analysis to assess network topology as a marker of function.