Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Sixel/Kitty graphics
Software for macromolecular model-building
macOS desktop app and Quick Look extension for molecular previews: Mol* 3D, xyzrender SVG, and RDKit grids.
blend molecules!
Run LAMMPS molecular dynamics in your browser: visual input-script builder, MD notebook with an engine checked against native LAMMPS, CMake compiler helper, and a GPU 3D viewer for LAMMPS data/dump, XYZ, PDB and CIF. No install, nothing uploaded.
Visualize structure data from Biotite with PyMOL
Structural biology superpowers for AI coding agents: PyMOL, ChimeraX, AlphaFold DB, RCSB PDB, UniProt, and Rosetta workflows.
A simple X11 molecular viewer
Ball-and-stick crystal structure viewer for Python. Publication-quality vector output (SVG, PDF) and trajectory animations (GIF, MP4) via matplotlib, with ASE and pymatgen interoperability.
A lightweight script to make vector images of molecules
Use this python plugin to visualize moleculars in Cinema 4D, and creat interesting animation with MoGraph tools!
Tool to compute molecular Solvent Excluded Surface meshes on the GPU using CUDA
Curated PyMOL configs and scripts for publication-quality rendering.
Scymol is a Python-based software package specifically designed to facilitate the setup and execution of molecular simulations in LAMMPS.
ECCE, the Extensible Computational Chemistry Environment: build molecules, set up and run NWChem, Gaussian, ORCA and MOPAC calculations on a workstation or cluster, and view the results. Linux, Windows and macOS. Originally developed at PNNL.
A molecular graphic toy visualizer in Rust
Tinker-FFE: Molecular Engineering GUI for Tinker
Cartoon mesh generation for secondary structure of proteins in C++
A 3D viewer and analysis workbench for protein and nucleic-acid structures, predicted complexes, density maps and structural proteomics data. One self-contained program for your own computer, installed with one command; your files stay on your machine.
Free, open-source 3D molecule viewer in the browser. Open PDB entries, AlphaFold models, PubChem compounds or your own PDB, mmCIF, SDF, MOL and XYZ files. Cartoon, stick and surface views, measurements, a linked sequence viewer, share links and iframe embeds. Built with React Three Fiber.
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