Mobile Genetic Elements Retrieving Tool
A pipeline for predicting and masking transposable elements in multiple genomes.
Python CLI for discovering and classifying transposable elements, with adapter-based methods and smoke-test diagnostics. Published in BMC Bioinformatics (2023).
Python workflow to annotate many eukaryotic genomes in one run: downloads assemblies from NCBI, masks repeats with RepeatModeler and RepeatMasker, and predicts genes with BRAKER3.
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
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